Version: cisCall v7.2.1-p-rc0

About

cisCall is a variant caller specialized for identifying DNA alterations of FFPE samples in clinical sequencing.

cisCall7 is the latest version of cisCall developed as a command-line tool, and contains the following variant caller modules:

Changelog

2023-08-28:
- v7.2.4
  - Fix bugs
  - Refactor functions and codes
  - cisCton: improve Lowess correction
  - cisFusion: add germline structural variants
2020-05-08:
- v7.2.1-p-rc0 released
  - Fix bugs
  - Deprecate TARGET and WEXOME mapping mode
2019-12-09:
- v7.2.0-p released
  - Enable the modules to detect more types of variants
    - cisMuton
      - MNV (Multiple Nucleotide Variant)
    - cisCton
      - copy number loss
    - cisFusion
      - structural variants
        
        long deletion
        
        inversion
        
        tandem duplication
  - Improve variant filters
  - Improve logging
  - Improve parallelization
  - Use BWA-MEM for read mapping
  - Use Samtools for duplicate removal
  - Update the names of output files and directories
  - Update the options
  - Fix bugs
2018-10-05:
- v7.2.0-p-rc4 released
  - Improve algorithms and parameters of false positive SNV/Indel filters (Surrounded and VAFlees)
  - Deprecate --free-memory-rate
  - Fix bugs

Send a request to download cisCall7 from the form at the following page: